Department of Biology

*
* Biology *
 
 
Department of Biology
285 Old Westport Road
University of Massachusetts
North Dartmouth
MA 02747-2300

Phone: (508) 999-8307
Fax:     (508) 999-8216

     
   
       
 
   
   
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2012 Publications

*Boardman T, Warner C, Gomez-Ramirez F, Matriciano J, Bromage E (2012). Characterization of anti-trout CD3e monoclonal antibodies. Veterinary Immunology and Immunopathology. 145: 511-515.

*Costa G, Danz H, Kataria P, Bromage E. (2012) A holistic view of the dynamisms of teleost IgM: A case study of Streptococcus iniae vaccinated rainbow trout (Onchorhynchus mykiss). Developmental and Comparative Immunology.36: 298-305.

Donley, J.M, Sepulveda, C.A., Aalbers, S.A., McGillivray, D.G., Syme, D.A. and Bernal, D. (in press) Temperature effects on the contractile properties of locomotor muscle in the common thresher shark (Alopias vulpinus). Fish Biochemistry and Physiology.

Espinosa, A.& Paz-y-Miño-C, G. 2012. Discrimination, Crypticity and Incipient Taxa in Entamoeba. Journal of Eukaryotic Microbiology, DOI: 10.1111/j.1550-7408.2011.00606.x.

Kanuga, M.K., Drew, R.E., Wilson-Leedy, J.G., & Ingermann, R.L. (in press). Subpopulation distribution of motile sperm relative to activation medium in steelhead (Oncorhynchus mykiss). Theriogenology.

*Marshall, H., *Field, L. *Afiadata, A., Sepulveda, C., Skomal, G. and Bernal, D. (in press). Haematological indicators of stress in longline-captured sharks Comparative Biochemistry and Physiology

Moisander, P.H., Cheshire, L.A., Braddy, J., Calandrino, E., Hoffman, M., Piehler, M.F., & Paerl, H.W. (2012) Facultative diazotrophy increases competitive strength of Cylindrospermopsis raciborskii under fluctuating nitrogen availability. FEMS Microbiology Ecology

Mulholland, M.R., Filippino, K.C., Bernhardt, P.W., Blanco, J., Mondragon, E., Turk, K., Moisander, P.H., & Zehr, J.P. (In press) N2 fixation and nifH gene diversity in mid -Atlantic coastal waters. Limnology and Oceanography.

Paz-y-Miño-C, G. (submitted). Cognitive Repertoire, Cognitive Legacies and Collective Reasoning: The Next Frontiers in Conservation Behavior. Animal Behavior, 3 volumes. ABC-CLEO, 2012.

Paz-y-Miño-C, G. & Espinosa A. (in press) Educators of prospective teachers hesitate to embrace evolution due to deficient understanding of science/evolution and high religiosity. Evolution: Education and Outreach.

Paz-y-Miño-C, G. & Espinosa, A. 2012. Introduction: Why People Do Not Accept Evolution: Using Protistan Diversity to Promote Evolution Literacy. Journal of Eukaryotic Microbiology, DOI: 10.1111/j.1550-7408.2011.00604.x .

*Ramirez-Gomez F, *Greene W, *Rego K, Hansen JD, *Costa G, Kataria P, Bromage E. (2012) Rainbow trout utilize a novel splicing mechanism for the generation of secreted IgD. Journal of Immunology. 183. 1341-1349.

*Rasch, J.A. and N.J. O�Connor. (in press) Development and behavior of megalopae of the non-native crab Hemigrapsus sanguineus in response to chemical cues from coastal fishes. Journal of Experimental Marine Biology and Ecology

Turner, J. T., V. Roncalli, P. Ciminiello, C. Dell'Aversano, E. Fattorusso, L. Tartaglione, Y. Carotenuto, G. Romano, F. Esposito, A. Miralto, & A. Ianora. 2012. Biogeographic effects of the Gulf of Mexico red tide dinoflagellate Karenia brevis on Mediterranean copepods. Harmful Algae 14: (in press)


2011 Publications

Bernal, D. (2011). Pelagic Fishes. Chapter 112 In Encyclopedia of Fish Physiology. (Eds. Cech, J., Farrell, A.). Elsevier Publishers.

Bernal D., Carlson, J., Goldman K., and Lowe, C. (2011). Energetics, Metabolism, and Endothermy in Sharks and Rays, Chapter 7: In Volume 1. The Biology of sharks an their relatives. Physiological Adaptations, Behavior, Ecology, Conservation and Management of Sharks and Their Relatives. 2nd edition (Eds. J. C. Carrier J. A. Musick and M. R. Heithaus). CRC Press. In press.

Bombar, D., Moisander, P.H., Dippner, J.W., Foster, R.A., Voss, M., Karfield, B., Zehr, J.P. (2011) Distribution of diazotrophic micro-organisms and nifH gene expression in the Mekong River plume during intermonsoon. Marine Ecology Progress Series 424: 39-U55

*Breton, J.S. K. Oliveira, R. Drew, K.L. Jones, C. Hagen, and S. Lance (2011) Development and characterization of ten polymorphic microsatellite loci in the yellowtail flounder (Limanda ferruginea). Conservation Genetics Resource 3:369-371

*Duffy, W.J., McBride, R.S., Cadrin, S.X. and K. Oliveira (2011) Is Cating's method of transverse groove counts to annuli applicable for all stocks of American shad? Transactions of the American Fisheries Society. (140, 4: 1023-1034)

Garbeva P., Tyc O., Remus-Emsermann M.N, van der Wal A., Vos M., Silby M., de Boer W. (2011). No apparent costs for facultative antibiotic production by the soil bacterium Pseudomonas fluorescens Pf0-1. PLoS One 6:e27266

Garbeva P., Silby M.W., Raaijmakers J.M., Levy S.B., Boer W. (2011). Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors. ISME Journal. 5:973-85.

Frere, C. H., Mann, J., Krutzen, M. Connor, R.C., Bejder, L., Sherwin, W. B. (2011) Nature and nurture: a step towards investigating their interactions in the wild. Communicative & Integrative Biology 4: 192-193.

*Messina, D.S., and Rajaniemi, T.K. (2011) Does the seed bank reflect plant distributions in a coastal dune? Northeastern Naturalist 18:107-114.

*Milligan, P.J., Stahl, E.A., Schizas, N.V. and Turner, J. TY. 2011. Phylogeography of the copepod Acartia hudsonica in estuaries of the northeastern United States. Hydrobiolgia. 666:155-165.

Nagler, J., Cavileer, T., Hunter, S., Drew, R., Okutsu, T., Sakamoto, T., & Yoshizaki, G. (2011). Non-sex specific genes associated with the secondary mitotic period of primordial germ cell proliferation in the gonads of embryonic rainbow trout (Oncorhynchus mykiss). Molecular Reproduction and Development. 78:181-187.

Moisander, P.H., Zhang, R.F., Boyle, E.A., Hewson, I., Montoya, J.P., Zehr, J.P. (2011)Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean. The ISME Journal doi:10.1038/ismej.2011.152

*Patterson, J., Sepulveda, C. and Bernal, D. (2011). The vascular morphology and in vivo muscle temperatures of thresher sharks (Alopiidae). Journal of Morphology. 272:1353-1364.DOI: 10.1002/jmor.10989.

Paz-y-Miño-C, G., Espinosa A. & Bai, C. 2011. The Jackprot Simulation couples mutation rate with natural selection to illustrate how protein evolution is not random. Evolution: Education and Outreach 4:502-514.

Paz-y-Miño-C, G. & Espinosa A. 2011. On the theory of evolution versus the concept of evolution: three observations. Evolution: Education and Outreach 4:308�312.

Paz-y-Miño-C, G. 2011. (editor) The Conservation Behaviorist 9(1): 1-8.

Paz-y-Miño-C, G. & Espinosa A. 2011. New England faculty and college students differ in their views about evolution, creationism, intelligent design, and religiosity. Evolution: Education and Outreach 4:323�342.

Silby M.W, Winstanley C., Godfrey S.A., Levy S.B., Jackson R.W. (2011). Pseudomonas genomes: diverse and adaptable. FEMS Microbiol Rev. 35:652-80.

Rajaniemi, T.K. (2011) Competition for patchy soil resources reduces community evenness. Oecologia 165:169-174.

Turner, J. T., D. G. Borkman, & P. S. Libby. 2011. Zooplankton trends in Massachusetts Bay, USA: 1998-2008. Journal of Plankton Research 33: 1066-1080.

Ye J, Bromage E, Kaattari I, Kaattari S (2011) Transduction of binding affinity by B lymphocytes: A new dimension in immunological regulation. Developmental and Comparative Immunology 35(9):982-90


2010 Publications

Aalbers. S,, Bernal, D., & Sepulveda, C. (2010). The functional role of the caudal fin in the feeding ecology of the common thresher shark (Alopias vulpinus). Journal of Fish Biology. 76: 1863-1868

Benner, M.J., Drew, R.E., Hardy, R.W., & Robison, B.D. (2010). Zebrafish (Danio rerio) vary by strain and sex in their behavioral and transcriptional responses to selenium supplementation. Comparative Biochemistry Physiology Part A. 157:310-318.

Bernal, D. (2010) Pelagic Fishes. Chapter 112 In Encyclopedia of Fish Physiology. (Eds. Cech, J., Farrell, A.). Elsevier Publishers. In press.

Bernal, D., Donley, J., McGillivray, D.G., Aalbers, S.A., Syme, D.A., & Sepulveda, C. (2010). Function of the medial red muscle during sustained swimming in common thresher sharks: Contrast and convergence with thunniform swimmers. Comparative Biochemistry and Physiology 155A: 454-463 doi:10.1016/j.cbpa.2010.01.005

Carpenter, L., Patterson, M., & Bromage, E. (2010). Water flow influences the spatiotemporal distribution of heat shock protein 70 within colonies of the coral Montastrea annularis. Journal of Experimental Marine Biology and Ecology. In press

Cox, A.A., Jezewski, P., Fang, P.K., & Payne-Ferreira, T.L. (2010). Zebrafish Wnt9a,9b paralog comparisons suggest ancestral roles for Wnt9 in Neural, Oral-Pharyngeal Ectoderm and Mesendoderm. Gene Expression Patterns. 10(6):251-8. doi.org/10.1016/j.gep.2010.05.005.

Hable, W.E. & Hart, P.E. (2010). Signaling mechanisms in the establishment of plant and fucoid algal polarity. Molecular Reproduction and Development. in press

Heberer, C., Aalbers, S.A., Bernal, D., Kohin, S., DiFiore, B. & Sepulveda, C.A. (2010) Insights into catch and release mortality, vertical distribution, and blood biochemistry of common thresher sharks (Alopias vulpinus) captured in the southern California recreational fishery. Fisheries Research. In press.

Kavanagh, K.D., Haugen, T.O., Gregersen, F., Jernvall, J., & Vollestad, L.A., (2010). Contemporary temperature-driven divergence in a Nordic freshwater fish under conditions considered to hinder adaptation. BMC Evolutionary Biology. In press.

Moisander, P.H. Beinart, R.A., Hewson, I., White, A., Johnson, K., Carlson, C., Montoya, J.M. & Zehr, J.P. 2010. Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain. Science 327:1512-1514.

Oliveira, K. & Hable, W.E. (2010) artificial maturation, fertilization and early development of the American eel, Anguilla rostrata. The Canadian Journal of Zoology. In press.

Paz-y-Miño C.G. & Espinosa, A. (2010). Integrating horizontal gene transfer and common descent to depict evolution and contrast it with "common design."Journal of Eukaryotic Microbiology 57:11-18.

Paz-y-Miño C.G. & Espinosa, A. (2010). On the theory of evolution versus the concept of evolution: three observations. Evolution: Education & Outreach. In press.

Paz-y-Miño C.G. & Espinosa, A. (2010). New England faculty and college students differ in their views about evolution, creationism, intelligent design and religiosity. Evolution: Education & Outreach. In press.

Paz-y-Miño C.G. & Espinosa, A. (2010). Integrating horizontal gene transfer and common descent to depict evolution and contrast it with 'Common Design.' Journal of Eukaryotic Microbiology. 57: 11-18.

Sepulveda, C.A., Aalbers, S.A., Ortega-Garcia, S., Wegner, N. Bernal, D. (2010) Depth distribution and temperature preferences of wahoo (Acanthocybium solandri) in the eastern north Pacific. Marine Biology. In press.

Skomal, G. & Bernal, D. (2010). Mechanisms and Adaptations Associated with Physiological Stress. Chapter 11. In Volume 2. The Biology of sharks an their relatives. Physiological Adaptations, Behavior, Ecology, Conservation and Management of Sharks and Their Relatives. (Eds. J.C. Carrier, J.A. Musick and M.R. Heithaus). CRC Press. pp 459-490.

Ye, J., Bromage, E. & Kaattari, S. (2010). The strength of B cell interaction with antigen determines the degree of IgM polymerization. Journal of Immunology. 184: 844-850.

*Yeung, E. & Paz-y-Miño C.G.. (2010). Trends in animal cognition and conservation behavior. The Conservation Behaviorist. 8(2). In press.


2009 Publications

*Alfaqih, M.A., Brunelli, J.P., Drew, R.E. & Thorgaard, G.H. (2009). Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss). BMC Genetics 10:2.

*Aieta A.E. & Oliveira, K. (2009). Distribution of the swimbladder parasite Anguillicola crassus in American eels in eastern North America. Diseases of Aquatic Organisms. 84:229-235

Bernal, D., Sepulveda, C., Musyl, M. & Brill, R. (2009). The eco-physiology of swimming and movement patterns of tunas, billfishes, and large pelagic sharks. Chapter 14. In Fish Locomotion - an etho-ecological perspective. (Eds. P. Domenici & D. Kapurr) Science Publishers. pp 436-483.

Bromage, E., *Stephens, R. & *Hassoun, L. (2009). The Third Dimension of ELISPOTs: Quantifying Antibody Secretion from individual Plasma Cell. Journal of Immunological Methods. 356:75-79.

Bromage, E. & Owens, L. (2009) Environmental factors affecting the susceptibility of barramundi to Streptococcus iniae. Aquaculture. 290:224-228.

Bromage, E., Carpenter, L., Kaattari, S. & *Patterson, M. (2009). Quantification of coral heat shock proteins from individual coral polyps. Marine Ecology Progress Series 376:123-132

*Chapalamadugu, K.C., Robison, B.D., Drew, R.E., Powell, M.S., Hill, R.A., Amberg, J.J., Rodnick, K.J., Hardy, R.W., Hill, M.L., & Murdoch, G.K. (2009). Dietary carbohydrate level affects transcription factor expression that regulates skeletal muscle myogenesis in rainbow trout. Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology 153:66-72.

Espinosa, A., Pedrizet, G., Paz-y-Miño C.G., Lanfranchi, R. & Phay, M. (2009). Effects of iron depletion on Entoamoeba histolytica alcohol dehydrogenase 2 (EhADH2) and trophozoite growth: implications for antiamoebic therapy. Journal of Antimicrobial Chemotherapy 63:675-678.

Hart, P.E. & Hable, W.E. Biology of Cells Laboratory Manual. Kendall Hunt Publishing, Dubuque, Iowa, U.S.A. Copyright 2009.

Hellström, M., Kavanagh, K.D., & Benzie, J.A., (2009). Multiple spawning events and sexual reproduction in the octocoral Sarcophyton elegans (Cnidaria: Alcyonacea) on Lizard Island, Great Barrier Reef. Marine Biology. DOI 10.1007/s00227-009-1325-8.

Hewson, I., Poretsky, R., Beinart, R.A., White, A., Shi, T., Bench, S.R., Moisander, P.H., Paerl, R.W., Tripp, H.J., Montoya, J.P., Moran, M.A. & Zehr, J.P. (2009). In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii in the Southwest Pacific Ocean. The ISME Journal 3:618-631.

Hunt, C., *Borkman, D.G., Lacoture, R., Turner, J.T. & Libby, S. (2009), Phytoplankton in Massachusetts Bay USA 1992-2007 Estuaries and Coasts.

Jezewski, P., Fang, P.K., Payne-Ferreira, T.L. & Yelick, P.C. (2009) Alternative splicing, phylogenetic analysis, and craniofacial expression of zebrafish tbx22. Dev. Dyn 238:1605-1612.

Kim, W., Silby, M.W., Purvine, S.O., Nicoll, J.S., Hixson, K.K., Monroe, M., Nicora, C.D., Lipton, M.S. & Levy, S.B. (2009). Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1. PLoS One. 4:e8455.

Moisander, P.H., Lehman, P.W., Ochiai. M. Corum. S. 2009. Diversity of Microcystis aeruginosa in the Klamath River and San Francisco Bay delta, California. Aquatic Microbial Ecology. 57:19-31.

Moisander, P.H., Ochiai, M. & Lincoff, A. (2009). Nutrient limitation of Microcystis aeruginosa in northern California Klamath River reservoirs. Harmful Algae. 8:889-897.

Paz-y-Miño C.G. & Espinosa, A. (2009). Acceptance of evolution increases with student academic level: a comparison between a secular and a religious college. Evolution: Education & Outreach 2:655-675.

Paz-y-Miño C.G. & Espinosa, A. (2009). Assessment of biology majors versus non-majors views on evolution, creationism and intelligent design. Evolution: Education & Outreach 2: 75-83.

Piehler, M.F., Dyble, J., Moisander, P.H., Chapman, A.D., Hendrickson, J. & Paerl, H.W. (2009). Interactions between nitrogen dynamics and the phytoplankton community in Lake George, Florida, USA. Lake and Reservoir Management 25:1-14.

Rajaniemi, T.K., Turkington, R. & Goldberg, D.E. (2009). Community level consequences of species interactions in an annual plant community. Journal of Vegetation Science. 20:836-846.

Rajaniemi, T.K. & Allison, V.J. (2009). Abiotic conditions and plant cover differentially affect microbial biomass and community composition on dune gradients. Soil Biology and Biochemistry. 41:102-109

Silby, M.W., Cerdeño-Tárraga, A., Vernikos, G. & 31 others. (2009). Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biology. 10:R51.

Silby, M.W., Nicoll, J.S. & Levy, S.B. (2009). Requirement of Polyphosphate by Pseudomonas fluorescens Pf0-1 for competitive fitness and heat tolerance in laboratory media and sterile soil. Applied Environmental Microbioly. 75: 3872-3881.

*Spier, C., Bromage, E., Harris, T., Unger, M. & Kaattari, S. (2009). The development and evaluation of monoclonal antibodies for the detection of polycyclic aromatic hydrocarbons. Analytical Biochemistry. 387:287-293.

Turner, J.T., *Borkman, D.G., *Lincoln, J.A., *Gauthier, D.A. & *Petitpas, C.M. (2009). Plankton studies in Buzzards Bay, Massachusetts, USA. VI. Phytoplankton and water quality, 1987-1998. Marine Ecology Progress Series. 376:103-122.

Zehr, J.P., Hewson, I. & Moisander, P.H. (2009). Molecular biology techniques and applications for ocean sensing. Ocean Science. 5:101-113.


2008 Publications

Barroso, R.M., Wheeler, P.A., LaPatra, S.E.,Drew, R.E. & Thorgaard, G.H. (2008). QTL for IHNV resistance and growth identified in a rainbow (Oncorhynchus mykiss) X Yellowstone cutthroat (Oncorhynchus clarki bouvieri) trout cross. Aquaculture. 277:156-163.

Bromage, E., *Long, C. & Kaattari, S. (2008). Biomarkers of oogenesis in Macoma balthica determined by subtractive immunization. Aquatic Biology 3:139-145

Drew, R.E., Rodnick, K.J., Settles, M., Wacyk, J., Churchill, E., Powell, M.S., Hardy, R.W., Murdoch, G.K., Hill, R.A. & Robison, B.D. (2008). Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio). Physiological Genomics. 35:283-295.

*Duffy-Echevarria, E., Connor, R.C. & St. Aubin, D. (2008). Observations of strand feeding by bottlenose dolphins (Tursiops truncatus) in Bull Creek, South Carolina. Marine Mammal Science. 24:202-206.

*Gauthier, D.A., *Lincoln, J.A. & Turner, J.T. (2008). Distribution, abundance, and growth of larval tautog, Tautoga onitis, in Buzzards Bay, Massachusetts, USA. Marine Ecology 29: 76-88.

Hable, W.E., *Reddy, S. & *Julien, L. (2008) The Rac1 inhibitor, NSC23766, depolarizes adhesive secretion, endomembrane cycling, and tip growth in the fucoid alga, Silvetia compressa. Planta 227:991-1000.

*Hassoun, L.,Hable, W., & Payne-Ferreira, T.L. (2008). Tissue Regeneration in the classroom. American Biology Teacher 70: 530-532.

*Heredia-Middleton, P., Brunelli, J., Drew, R.E. & Thorgaard, G.H. (2008). Heat shock protein (HSP70) RNA expression differs among rainbow trout (Oncorhynchus mykiss) clonal lines. Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology. 149:552-556.

*Iafrate, J.D. & Oliveira, K. (2008). Factors affecting migration patterns of juvenile river herring in a coastal Massachusetts stream. Environmental Biology of Fishes 81: 101-110.

Ianora, A., Casotti, R., Bastianini, M., Brunet, C., d'Ippolito, G., Acri, F., Fontana, A., Cutignano, A., Turner, J.T. & Miralto, A. (2008). Low reproductive success for copepods during a bloom of the non-aldehyde-producing diatom Ceratulina pelagica in the North Adriatic Sea. Marine Ecology. 29:399-410.

Jezewski, P., Fang, P.K., Payne-Ferreira. T,L, & Yelick, P.C. (2008). Zebrafish wnt9b Synteny and expression during first and second arch, heart and pectoral fin bud morphogenesis. Zebrafish. 5:169-77.

Kaattari, S., *Brown, G., Kaattari, I., Ye, J., Haines, A. & Bromage, E. (2008). The Cellular and Developmental Biology of the Teleost Antibody Response. In: Fish Defenses Vol I Immunology (Eds. Zaccone, Secombes, Manning, Kapoor). Science Publishers, New Hampshire.

*Long, C., Bromage, E., Seitz, R. & Kaattari, S. (2008). Quantifying fecundity in Macoma balthica using an enzyme-linked immunosorbent assay (ELISA). Aquatic Biology 3: 187-193.

Moisander P.H., Paerl H.W. & Zehr J.P. (2008). Effects of inorganic nitrogen on taxa-specific cyanobacterial growth and nifH expression in a subtropical estuary. Limnology and Oceanography. 53:2519-2432.

Moisander P.H., Beinart R.A., Voss M. & Zehr J.P. (2008). Diversity and abundance of diazotrophs in the South China Sea during intermonsoon. The ISME Journal. 2:954-967.

*Muzzy, R.A. & Hable, W.E. (2008). Rac1 function during fucoid development. Plant Signaling and Behavior 3:717-719.

Robison, B.D., Drew, R.E., Murdoch, G.K., Powell, M., Rodnick, K.J., Settles, M., Stone, D., Churchill, E., Hill, R.A., Papasani, M.R., Lewis, S.S. & Hardy, R.W.. (2008). Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio). Comparative Biochemistry and Physiology Part D Genomics and Proteomics. 3:141-154.

Sepulveda, C.A., Dickson, K.A., Bernal, D. & Graham, J. B. (2008). Elevated red myotomal muscle temperatures in the most basal tuna species, Allothunnus fallai. Journal of Fish Biology. 73: 241-249.

Silby, M.W. & Levy, S.B. (2008). Overlapping protein-encoding genes in Pseudomonas fluorescens Pf0-1. PLoS genetics. 4:e1000094.

2007 Publications

Allison, V. J., Rajaniemi, T.K., Goldberg, D.E. & Zak, D.R. (2007). Quantifying direct and indirect effectsof fungicide on an old-field plant community: an experimental null-community approach. Plant Ecology. 190:53-69.

Bromage, E. Vadas, G., Harvey, E., Unger, M., & Kaattari, S. (2007). Validation of an Antibody-Based Biosensor for Rapid Quantification of 2,4,6-Trinitrotoluene (TNT) Contamination in Ground Water and River Water. Environmental Science and Technology. 41:7067-72

Bromage, E., & Kaattari, S. (2007). Simultaneous quantitative analysis of multiple protein species within a single sample using standard scanning densitometry.Journal of Immunological Methods, 323:109-113

Bromage, E., Lackie, T., Unger, M.A., Ye, J. & Kaattari, S.L. (2007) The development of a real-time biosensor for the detection of trace levels of trinitrotoluene (TNT) in aquatic environments. Biosensors and Bioelectronics. 22: 2532-38

Connor, R.C. 2007. Complex alliance relationships in bottlenose dolphins and a consideration of selective environments for extreme brain size evolution in mammals. Philosophical Transactions of the Royal Society: Biological Sciences 362:587-602.

Connor, R.C. 2007. Invested, extracted & byproduct benefits: a modified scheme for the evolution of cooperation. Behav. Proc. 76:109-113.

Drew, R.E., Schwabl, H., Wheeler, P.A. & Thorgaard, G.H. (2007). Detection of QTL influencing cortisol levels in rainbow trout (Oncorhynchus mykiss). Aquaculture 272:S183-S194.

Hewson, I., Moisander, P.H., Morrison, A.E. & Zehr, J.P. (2007). Diazotrophic bacterioplankton in a coral reef lagoon: Phylogeny, diel expression, and response to phosphate enrichment. The ISME Journal. 1:78-91.

Hewson, I., Moisander, P.H., Achilles, K.A., Carlson, C.A., Jenkins, B.D., Mondragon, E.A., Morrison A.E. & Zehr, J.P. (2007). Characteristics of diazotrophs in epi-to abyssopelagic waters of the Sargasso Sea. Aquatic Microbial Ecology. 46:15-30.

Hight, B.V., Holts, D., Graham, J.B., Kennedy, B.P., Taylor, V., Sepulveda, C.A., Bernal, D., Ramon, D., Rasmussen, R. & Lai, Chin, L. (2007). Plasma catecholamine levels as indicators of the post-release survivorship of juvenile pelagic sharks caught on experimental drift longlines in the Southern California Bight. Marine Freshwater Research. 58:145-151.

*Kaplan, J.D. & Connor, R.C. 2007. A preliminary examination of sex differences in tactile interactions among juvenile Atlantic spotted dolphins (Stenella frontalis). Marine Mammal Science, 23: 943-953.

Kavanagh, K.D., Evans, A.R. & Jernvall, J. (2007). Predicting evolutionary patterns of mammalian teeth from development. Nature 449:427-432.

Jiang, M., Brown, M.W., Turner, J.T., Kenney, R.D., Mayo, C.A., Zhang, Z. & Zhou, M. (2007). Springtime transport and retention of Calanus finmarchicus in Massachusetts and Cape Cod Bays, USA, and implications for right whale foraging. Marine Ecology Progress Series. 349:183-197.

*Kim, A.K.A. & O'Connor, N.J. (2007). Early stages of the Asian shore crab Hemigrapsus sanguineus as potential prey for the striped killifish Fundulus majalis. Journal of Experimental Marine Biology and Ecology 346: 28-35.

Moisander, P.H., Paerl, H.W., Dyble, J. & Sivonen, K. (2007). Phosphorus limitation and diel control in nitrogen-fixing cyanobacteria in the Baltic Sea. Marine Ecology Progress Series. 345:41-50.

Moisander, P.H., Morrison, A.E., Ward, B.B., Jenkins, B.D. & Zehr, J.P. (2007). Spatial-temporal variability in diazotroph assemblages in Chesapeake Bay using an oligonucleotide nifH microarray. Environmental Microbiology. 9:1823-1835.

Morisaka, T. & Connor, R.C. 2007. Predation by killer whales (Orcinus orca) and the evolution of whistle loss and narrow-band high frequency clicks in odontocetes. J. Evol. Biol. 20: 1439-1458

Murphy, B.F., Leis, J.M. & Kavanagh, J.D. (2007). Larval development of Pomacentrus amboinensis (Perciformes: Pomacentridae), the Ambon damselfish. Journal of Fish Biology. 71:569-584.

O'Connor, N.J. (2007). Stimulation of molting in megalopae of the Asian shore crab Hemigrapsus sanguineus: physical and chemical cues. Marine Ecology Progress Series. 352:1-8.

Oviatt, C.A., Hyde, K.J.W., Keller, A.A. & Turner, J.T. (2007). Production patterns in Massachusetts Bay with outfall relocation. Estuaries and Coasts. 30:35-46.

Paz-y-Miño C.G. (2007). Conservation behavior in the Galapagos. The Conservation Behaviorist 5:4-5.

Perry, C.N., Cartamil, D.P., Bernal, D., Sepulveda, C.A., Theilmann, R.J., Graham, J.B. & Frank, L.R. (2007) Quantification of red myotomal muscle volume and geometry in the shortfin mako shark (Isurus oxyrinchus) and the salmon shark (Lamna ditropis) using T1-weighted magnetic resonance imaging. Journal of Morphology. 266:284-292.

Rajaniemi, T.K. (2007). Root foraging traits and competitive ability in heterogeneous soils. Oecologia. 153:142-152

Reynolds, H.L. & Rajaniemi, T.K. (2007). Plant interactions: competition. Chapter 15. In Functional plant ecology (Eds. Pugnaire, F. Valladares, F.), CRC Press LLC. pp 457-480.

*Roemer, M.E. & K. Oliveira. 2007. Validation of back-calculation growth equations of juvenile bluefish (Pomatomus saltatrix) using tetracycline marked otoliths. Fisheries Bulletin 105: 305-309.

Sepulveda, C.A., Graham, J.B. & Bernal, D. (2007). Aerobic metabolic rates of swimming mako sharks, Isurus oxyrinchus. Marine Biology. 152:1087-1094.

Silby, M.W., Ferguson, G.C., Billington, C. & Heinemann, J.A. (2007). Localization of the plasmid-encoded proteins TraI and MobA in eukaryotic cells. Plasmid. 57: 118-30.

Sivonen, K., Halinen, K., Sihvonen, L., Koskenniemi, K., Sinkko, H., Rantasärkkä, K., Moisander, P.H. & Lyra, C. (2007). Microbiological diversity and function in the Baltic Sea with emphasis on cyanobacteria. Ambio. 36 (2-3):180-185.

2006 Publications

Bromage, E., Ye, J. & Kaattari, S. (2006). Antibody structural variation in rainbow trout fluids. Comparative Biochemistry and Physiolology Part B. 143:61-69.

Brown, K.H., Drew, R.E., Weber, L.A. & Thorgaard, G.H. (2006). Intraspecific variation in the rainbow trout mitochondrial DNA genome. Comparative Biochemistry and Physiology Part D Genomics and Proteomics. 1:219-226.

Connor, R.C., Smolker, R.A. & Bejder, L. (2006). Synchrony, social behavior and alliance affiliations in Indian Ocean bottlenose dolphins (Tursiops aduncus). Animal Behavior. 72:1371-1378.

Connor, R.C., Mann, J. & Capps, J. (2006). A sex-specific affiliative contact behavior in Indian Ocean bottlenose dolphins, Tursiops sp. Ethology 112:631-638.

Granéli, E. & Turner, J.T. (2006). Ecology of Harmful Algae. Ecological Studies 189. Springer-Verlag, Berlin and Heidelberg 413 pp.

*Hadley, R., Hable, W.E., & Kropf, D.L. (2006) Polarization of the endomembrane system is an early event in fucoid zygote development. BMC Plant Biology 6:1-10.

Landis, E.D., Palti, Y., Dekoning, J., Drew, R., Phillips, R.B. & Hansen, J.D. (2006). Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes. Immunogenetics 58:56-69.

Kavanagh, K.D. & Olney, J.E. (2006). Ecological Correlates of Population Density and Behavior in the Black Triggerfish Melichthys niger (Balistidae). Environmental Biology of Fishes 76:387-398.

Moisander, P.H., Shiue, L., Steward, G., Jenkins, B.D., Bebout, B.M. & Zehr, J.P. (2006). Application of a nifH oligonucleotide microarray for profiling diversity of N2-fixing microorganisms in marine microbial mats. Environmental Microbiology. 8:1721-1735.

O'Connor, N.J. & *Van, B.T. (2006). Adult fiddler crabs Uca pugnax (Smith) enhance sediment-associated cues for molting of conspecific megalopae. Journal of Experimental Marine Biology and Ecology 335:123-130.

Paz-y-Miño C.G. (2006). Transitive reasoning in animals. Mente y Cerebro/ Investigacion y Cienca of Scientific American 19: 40-45.

Phillips, R.B., Nichols, K.M., DeKoning, J.J., Morasch, M.R., Keatley, K.A., Rexroad III, C., Gahr, S.A., Danzmann, R.G., Drew, R.E. & Thorgaard, G.H. (2006). Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 174:1661-1670.

Rajaniemi, T.K., Goldberg, D.E., Turkington, R. & Dyer, A.R. (2006) Quantitative partitioning of regional and local processes shaping regional diversity patterns. Ecology Letters. 9:121-128.

Turner, J.T., *Borkman, D.G. & Hunt, C.A. (2006). Zooplankton of Massachusetts Bay, USA, 1992-2003: relationships between the copepod Calanus finmarchicus and the North Atlantic Oscillation. Marine Ecology Progress Series. 311:115-124.

Zehr, J.P., Church, M.J. & Moisander, P.H. (2006). Diversity, distribution, and biogeochemical significance of nitrogen-fixing microorganisms in anoxic and suboxic ocean environments. pp. 337-371. In: Neritin LN (ed) Past and present water column anoxia. NATO Science Series IV. Vol 64. Springer.

2005 Publications

Albertson, R.C., Payne-Ferreira, T.L., Postlethwait, J. & Yelick, P.C. (2005) Zebrafish acvr2 and acvr2b exhibit dis-tinct roles in craniofacial development. Dev. Dyn. 233:1405-1418.

Bartlett, J.D., *Dwyer, S.E., Beniash, E., Skobe, Z. & Payne-Ferreira, T.L. (2005) Fluorosis: A new model and new in-sights. J. Dent. Res. 84(9):832-836.

Bernal, D. Donley, J.M., Shadwick, R.E. & Syme, D.A. (2005). Mammal-like muscles power swimming in a cold-water shark, Nature 437, 1349-1352.

Bernal, D. & Sepulveda, C. (2005). Evidence for temperature elevation in the aerobic swimming musculature of the Common thresher shark, Alopias vulpinus. Copeia

Connor, R.C. & Whitehead, H. (2005) .Alliances II: Rates of encounter during resource utilization: A general model of intrasexual alliance formation in fission-fusion societies. Animal Behaviour. 69:127-132.

Doucette, G.J., Turner, J.T., Powell, C.L., Keafer, B.A. & Anderson, D.M. (2005). ECOHAB-Gulf of Maine. Trophic accumulation of PSP toxins in zooplankton during Alexandrium fundyense blooms in Casco Bay, Gulf of Maine, April - June, 1998. I. Toxin levels in A. fundyense and zooplankton size fractions. Deep-Sea Research II. 52:2764-2783.

*Gazda, S., Connor, R.C., Edgar, R. & Cox, F. (2005). A Division of Labor with Role Specialization in Group-Hunting Bottlenose Dolphins (Tursiops truncatus) off Cedar Key, Florida. The Proceedings of the Royal Society: Biological Sciences, 272: 135-140.

Gravelat, F.N., Strain, S.R. & Silby, M.W. (2005). Fitness traits in soil bacteria. In Frontiers in Antimicrobial Resistance: A Tribute to Stuart B. Levy. eds Michael N. Alekshun, David G. White, and Patrick F. McDermott. ASM Press.

Hable, W.E., and Kropf D.L. (2005) The Arp2/3 complex nucleates actin arrays during zygote polarity establishment and growth. Cell Motility and the Cytoskeleton 61: 9-20.

*Kassai, Y., Munne, P., Hotta, Y., Penttilä, E., Kavanagh, K., Ohbayashi, N., Takada, S., Thesleff, I., Jernvall, J. & Itoh, N. (2005). Regulation of Mammalian Tooth Cusp Patterning by Ectodin. Science 309:2067-2070.

Kaattari, S., Bromage, E., & Kaattari, I. (2005) Analysis of Long-lived Plasma Cell Production and Regulation: Implications for Vaccine Design for Aquaculture. Aquaculture 246:1-9.

Kavanagh, K.D. (2005). Boom-or-bust growth in the coral reef lagoon. Marine Ecology Progress Series. 286:307-310.

Krützen, M., Mann, J., Heithaus, M.R., Connor, R.C., Bejder, L. & Sherwin, W.B. (2005). Cultural transmission of a foraging strategy involving tool use in bottlenose dolphins. Proceedings of the National Academy of Sciences. 102:8939-8943.

Moisander, P.H., Piehler, M.F. & Paerl, H.W. (2005). Diversity and activity of epiphytic nitrogen-fixers on standing dead stems of the salt marsh grass Spartina alterniflora. Aquatic Microbial Ecology. 39: 271-279.

O'Connor, N.J. (2005). Influence of extracts of adult crabs on molting of fiddler crab megalopae (Uca pugnax). Marine Biology 146:753-759.

Paz-y-Miño, C.G. (2005). Animal Cognition and its role in Conservation Behavior. The Conservation Behaviorist 3:4-5.

Paerl, H.W., Piehler, M.F., Valdes, L., Dyble, J., Moisander P.H., Pinckney, J.L. & Steppe, T.F. (2005). Determining anthropogenic and climatically-induced change in aquatic ecosystems using microbial indicators: An integrative approach. Verhandlungen des Internationalen Verein Limnologie. 29:89-113.

*Sardi, K., Weinrich, M. & Connor, R.C. (2005). Social interactions of humpback whale (Megaptera novaeangliae): Mother calf pairs on a north Atlantic feeding ground. Behaviour. 142: 731-750.

Sepulveda, C.A., *Wegner, N.C., Bernal, D. & Graham, J.B. (2005). The red muscle morphology of the thresher sharks (family Alopiidae). Journal of Experimental Biology 208:4255-4261.

Silby, M.W., Giddens, S.R. & Mahanty, H.K. (2005). Mutation of a LysR-type regulator of antifungal activity results in a GASP phenotype in Pseudomonas aureofaciens PA147-2. Applied Environmental Microbiology. 71:569-573.

Sundin, K., Brown, K.H., Drew, R.E., Nichols, K.M., Wheeler, P.A. & Thorgaard, G.H. (2005). Genetic analysis of a development rate QTL in backcrosses of clonal rainbow trout, Oncorhynchus mykiss. Aquaculture 247:75-83

Turner, J.T. & *D.G. Borkman. 2005. Impact of zooplankton grazing on Alexandrium blooms in the offshore Gulf of Maine. Deep-Sea Research II 52: 2801-2816.

Turner J.T., Doucette, G.J., Keafer, B.A. & Anderson, D.M. (2005). ECOHAB-Gulf of Maine. Trophic accumulation of PSP toxins in zooplankton during Alexandrium fundyense blooms in Casco Bay, Gulf of Maine, April - June, 1998. II. Zooplankton abundance and size-fractionated community composition. Deep-Sea Research II 52:2784-2800.

Whitehead, H. & Connor, R.C. (2005). Alliances I: How large should alliances be? Animal Behaviour 69: 117-126.

Zwollo, P., Cole, S., Bromage, E. & Kaattari, S. (2005) Physical and serological analyses of B cell populations in immune tissues of the rainbow trout. Journal of Immunology 174:6608-6616.

2004 Publications

*Bisgrove, S.R., Hable, W.E. & Kropf, D.L. (2004) +TIPS and microtubule regulation. The beginning of the plus end in plants. Plant Physiology 136:3855-3863.

Bromage, E., Kaattari, I., Zwollo, P. & Kaattari, S. (2004) Plasmablast and Plasma Cell Production and Distribution in Trout Immune Tissues. Journal of Immunology. 173:7317-7323.

Bromage, E., Ye, J., Owens, L., Kaattari, I. & Kaattari, S. (2004) Use of Staphylococcal Protein A in the Analysis of Teleost Immunoglobulin Structural Diversity. Developmental and Comparative Immunology. 28:803-814.

Krützen, M., Barre, L.M.,Connor, R.C., Mann, J. & Sherwin, W.B. (2004). O father: where art thou? Paternity assessment in an open fission-fusion society of wild bottlenose dolphins (Tursiops sp.) in Shark Bay, Western Australia. Molecular Ecology. 13:1975-1990.

O'Connor, N.J. & Judge, M.L. (2004). Molting of fiddler crab Uca minax megalopae: stimulatory cues are specific to salt marshes. Marine Ecology Progress Series. 282:229-236

Paerl, H.W., Dyble, J., Pinckney, J.L., Valdes, L.M., Millie, D.F., Moisander, P.H., Morris, J.T., Bendis, B. & Piehler, M.F. (2004). Using microalgal indicators to assess human and climatically induced ecological changes in estuaries. pp. 145-174. In: Bortone SA (ed) Estuarine Indicators. CRC Press, Boca Raton, FL, USA.

Paz-y-Miño C.G., Bond, A.B, Kamil, A.C. & Balda, R.P. (2004). Pinyon jays use transitive inference to predict social dominance. Nature 430: 778-781.

Silby, M.W. & Levy, S.B. (2004). Use of IVET to identify genes important in growth and survival of Pseudomonas fluorescens Pf0-1 in soil: discovery of expressed sequences with novel genetic organization. Journal of Bacteriology. 186:7411-7419.

Silby, M.W., Rainey, P.B. & Levy, S.B. (2004). IVET experiments in Pseudomonas fluorescens reveals recognizable overlapping genes. Microbiology. (UK). 150:518-520.

Turner, J.T. & *D.G. Borkman. (2004). Zooplankton grazing during Alexandrium blooms in the Gulf of Maine, p. 95-97. In: Harmful Algae. Proceedings of the Xth International Conference on Harmful Algal Blooms (eds Steidinger, K. A., J. H. Landsberg, C. R. Tomas, and G. A. Vargo), St. Petersburg, Florida, USA,

2003 Publications

Bernal, D., *Smith, D., *Lopez, G., *Weitz, D., *Grimminger, T.A., Dickson. K.A. & Graham, J.B. (2003). Comparative studies of high performance swimming in sharks. II. Metabolic biochemistry of locomotor and myocardial muscle in endothermic and ectothermic sharks. Journal of Experimental Biology. 206:2845-2857

Bernal, D., Sepulveda, C., Mathieu-Costello, O. & Graham, J. B. (2003). Comparative studies of high performance swimming in sharks: I. Red muscle morphometrics, vascularization, and ultrastructure. Journal of Experimental Biology. 206:2831-2843.

*Bourdeau, P.E. & O'Connor, N.J. (2003). Predation by the nonindigenous Asian shore crab Hemigrapsus sanguineus on macroalgae and molluscs. Northeastern Naturalist 10: 319-334

*Fedorowicz, S.M., Beard, D. & Connor, R.C. (2003). Food sharing in wild bottlenose dolphins. Aquatic Mammals. 29.3: 355-359.

Hable, W.E., *Miller, N.R. & Kropf D.L. (2003) Polarity establishment requires dynamic actin in fucoid zygotes. Protoplasma 221:193-204.

Heinemann, J.A. & Silby, M.W. (2003). Horizontal gene transfer and the selection of antibiotic resistance. In Multiple Drug Resistant Bacteria. ed. Carlos F. Amábile-Cuevas, Horizon Press.

Kavanagh, K.D. (2003). A molecular switch between proliferation and differentiation, maintained by anti-cancer selection, imposes a developmental constraint on ontogenetic rates and morphological evolution. Evolution 57:939-948.

Kavanagh, K.D. & Alford, R.A. (2003). Sensory and skeletal development and growth in relation to the duration of the embryonic and larval stages in damselfishes (Pomacentridae). Biological Journal of the Linnean Society 80:187-206.

Krützen, M., Sherwin, W.B., Connor, R.C., Barré, L.M., Van de Casteele, T, Mann, J. & Brooks, R. (2003). Contrasting relatedness patterns in bottlenose dolphins (Tursiops sp.) with different alliance strategies. Proceedings of the Royal Society of London, Biological Sciences. 270:497-502.

Liemar, O. & Connor, R. (2003). Byproduct benefits, reciprocity and pseudo-reciprocity in mutualism. In: Genetic & Cultural Evolution of Cooperation (Eds Hammerstein, P.) Dahlem Workshop Report 90, MIT Press; pp. 203-22

Moisander, P.H., Steppe, T.F., Hall, N.S., Kuparinen, J. & Paerl, H.W. (2003). Variability in nitrogen and phosphorus limitation for Baltic Sea phytoplankton during nitrogen-fixing cyanobacterial blooms. Marine Ecology Progress Series. 262:81-95.

Munro, J., Oakey, J., Bromage, E. & Owens, L. (2003). Experimental bacteriophage-mediated virulence in strains of Vibrio harveyi. Diseases of Aquatic Organisms. 54:187-194.

Paerl, H.W., Valdes, L.M., Pinckney, J.L., Piehler, M.F., Dyble, J. & Moisander, P.H. (2003). Microalgae as indicators of estuarine and coastal ecological change. Bioscience. 53:953-964.

Paerl, H.W., Dyble, J., Moisander, P.H., Noble, R.T., Piehler, M.F., Pinckney, J.L., Twomey, L. J. & Valdes, L.M. (2003). Microbial indicators of aquatic ecosystem change: Current applications to eutrophication studies. FEMS Microbiology Ecology. 1561:1-14.

Paz-y-Miño C.G. (2003). Behavioral unknowns: an emerging challenge for conservation. The Conservation Behaviorist 1(2): 2.

Paz-y-Miño C.G. (2003). Contribution of animal behavior research to conservation biology. Animal Behavior Society Newsletter 48(1): 1-2.

Robleto, E.A., López-Hernández, I., Silby, M.W. & Levy, S.B. (2003). Genetic analysis of the AdnA Regulon in Pseudomonas fluorescens: non-essential role of flagella in adhesion to sand and biofilm formation. Journal of Bacteriology. 185:453-460.

2002 Publications

Bromage, E. & Owens, L. (2002). Infection of barramundi Lates calcarifer with Streptococcus iniae: effects of different routes of exposure. Diseases of Aquatic Organisms 52:199-205.

Cimino, E.J., Owens, L., Bromage, E. & Anderson, T.A. (2002) A newly developed ELISA showing the effect of environmental stress on levels of hsp86 in Cherax quadricarinatus and Penaeus monodon. Comparative Biochemistry and Physiology. 132A: 591-598.

Ferkin, M. H., Mech, S. G. & Paz-y-Miño C.G. (2002). Scent marking in meadow voles and prairie voles: a test of three hypotheses. Behaviour 138:1319-1336.

Hietanen, S., Moisander, P.H., Kuparinen, J. & Tuominen, L. (2002). No sign of denitrification in a Baltic Sea cyanobacterial bloom. Marine Ecology Progress Series. 242:73-82.

Moisander, P.H., Hench, J.L., Kononen, K. & Paerl, H.W. (2002). Small-scale shear effects on heterocystous cyanobacteria. Limnology and Oceanography. 47:109-119.

Moisander, P.H., McClinton, E. & Paerl, H.W. 2002. Salinity adaptation of growth, photosynthetic parameters, and nitrogenase activity in estuarine planktonic cyanobacteria. Microbial Ecology. 43:432-442.

Paz-y-Miño C.G., Leonard, S. T. & Trimble, J. F. (2002). Self-grooming and sibling recognition in meadow voles (Microtus pennsylvanicus) and prairie voles (M. ochrogaster). Animal Behaviour 63:331-338.

Piehler, M.F., Dyble, J., Moisander, P.H., Pinckney, J.L. & Paerl, H.W. (2002). Effects of modified nutrient concentrations and ratios on the structure and function of the native phytoplankton community in the Neuse River Estuary, North Carolina, USA. Aquatic Ecology. 36:371-385.

2001 Publications

Bernal, D., Dickson K.A., Shadwick R.E. & Graham J.B. (2001). Analysis of the evolutionary convergence for high-performance swimming in lamnid sharks and tunas. Comparative Biochemistry and Physiology. 179:695-726.

Bernal, D. Sepulveda, C. & Graham, J.B. (2001). Water tunnel studies of heat balance in swimming mako sharks. Journal of Experimental Bioloy. 204:4043-4054.

Bernal D, Dickson, K.A. & Graham J.B (2001). Convergence for high-performance swimming in lamnid sharks and tunas. Thermoregulation and metabolic biochemistry. American Zoologist. 40:942-943.

*Chute, A.S. & Turner, J.T. (2001). Plankton studies in Buzzards Bay, Massachusetts, USA. V. Ichthyoplankton, 1987-1993. Marine Ecology Progress Series 224: 45-54.

Connor, R.C., Heithaus, M.R. & Barre, L.M. (2001). Complex social structure, alliance stability and mating access in a bottlenose dolphin 'super-alliance'. Proceedings of the Royal Society of London, Biological Sciences. 268:263-267.

Connor, R.C. (2001). Individual foraging specializations in marine mammals: culture and ecology. Behavioral and Brain Sciences, 24:329-330

Ferkin, M. H., Leonard, S. T., Heath, L. A. & Paz-y-Miño C.,G. (2001). Self-grooming as a tactic used by prairie voles, Microtus ochrogaster, to increase scent marking detection by conspecifics. Ethology 107: 939-949.

Hable, W.E., *EerNisse, P., *Hoggan M., & Kropf, D.L. (2001) Effect of calcium ionophores on early development in fucoid algae. Phycological Research 49:145-154.

*Lincoln, J.A., Turner, J.T., Bates, S.S., Léger, C. & Gauthier, D. (2001). Feeding, egg production and egg hatching success of the copepods Acartia tonsa and Temora longicornis on diets of the toxic diatom Pseudo-nitzschia multiseries and the non-toxic diatom Pseudo-nitzschia pungens. Proceedings of the Seventh International Conference on Copepoda, Hydrobiologia, 453/454: 107-120.

*Ledesma, M.E. & O'Connor, N.J.(2001). Habitat and diet of the non-native crab Hemigrapsus sanguineus in southern New England. Northeastern Naturalist. 8:63-78

*Keeney, D.B., & Campbell, R.A. (2001). Grillotia borealis sp. n. (Cestoda: Trypanorhyncha) from five species of Bathyraja (Rajiformes: Arhynchobatidae) in the North Pacific Ocean with comments on parasite enteric distribution. Folia Parasitologica 48: 21-29

MacGregor, B.J., Van Mooy, B., Baker, B.J., Mellon, M., Moisander, P.H., Paerl, H.W., Zehr , J., Hollander, D. & Stahl, D.A. (2001). Microbiological, molecular biological, and stable isotopic evidence for nitrogen fixation in the open waters of Lake Michigan. Environmental Microbiology. 3:205-219.

*Miksis, J.L., Grund, M.D., Nowacek, D.P., Connor, R.C. & Tyack, P.L. (2001). Cardiac responses to acoustic playback experiments in the captive bottlenose dolphin, Tursiops truncatus. Journal of Comparative Psychology 115:227-332.

Monds, R.D., Silby, M.W. & Mahanty, H.K. (2001). Expression of the Pho regulon negatively regulates biofilm formation by Pseudomonas aureofaciens PA147-2. Molecular Microbiology. 42:415-426.

Paerl, H.W., Fulton, R., Moisander, P.H. & Dyble, J. (2001). Harmful freshwater algal blooms, with an emphasis on cyanobacteria. The Scientific World. 1:76-113.

*Phillippi, A.L., O'Connor, N.J., Lewis, A.F. & Kim, Y.K. (2001). Surface flocking as a possible antibiofoulant. Aquaculture 195: 225-238

Salkoff, L., Butler, A., Fawcett, G., Kunkel, M., McArdle, C., Paz-y-Miño C.G., Nonet, M., Walton, N., Wang, Z.-w., Yuan, A. & Wei. A. (2001). Evolution tunes the excitability of individual neurons. Neuroscience 103:853-859.

*Stephen, B.J. & R.W. Griffith (2001). Excretion of ammonia and urea during development in the oyster toadfish, Opsanus tau. Marine Freshwater Behavior Physiology 34: 257-264.

2000 Publications

Connor, R.C., Wells, R., Mann, J. & Read, A. (2000). The bottlenose dolphin: social relationships in a fission-fusion society. In: Cetacean Societies: Field studies of whales and dolphins, (Eds: J. Mann; R.Connor, P.Tyack, and H. Whitehead) University of Chicago Press, pp 91-126.

Connor, R.C. Read, A. & Wrangham, R.W. (2000). Male reproductive strategies and social bonds In: Cetacean Societies: Field studies of whales and dolphins. (Eds: J. Mann; R.Connor, P.Tyack, and H. Whitehead) University of Chicago Press, pp 247-269.

Connor, R.C., Heithaus, M.R., Berggren, P. and Miksis, J.L. 'Kerplunking': Surface fluke-splashes during shallow water bottom foraging by bottlenose dolphins. 2000. Marine Mammal. Science. 16:646-653.

Godfrey, S.A.C., Silby, M.W., Falloon, P.G. & Mahanty, H.K. (2000). Biological Control of Phytophthora megasperma var. sojae, causal agent of Phytophthora Rot of Asparagus, by Pseudomonas aureofaciens PA147-2: A Preliminary Field Trial. New Zealand Journal of Crop and Horticultural Science. 28:97-103.

Hable, W.E. & Kropf, D.L. (2000) Sperm entry induces polarity in fucoid zygotes. Development. 127:493-501.

Moisander, P.H. & Paerl, H.W. (2000). Growth, primary productivity, and nitrogen fixation potential of Nodularia spp. (Cyanophyceae) in water from a subtropical estuary in the United States. Journal of Phycology. 36:645-658.

Silby, M.W. & Mahanty, H.K. (2000). The importance of recA mutant strains for the study of antifungal genes in Pseudomonas aureofaciens PA147-2. Canadian Journal of Microbiology. 46:744-748.

2000 - 2012 Publications

2000

Connor, R.C., Wells, R., Mann, J. & Read, A. (2000). The bottlenose dolphin: social relationships in a fission-fusion society. In: Cetacean Societies: Field studies of whales and dolphins, (Eds: J. Mann; R.Connor, P.Tyack, and H. Whitehead) University of Chicago Press, pp 91-126.

Connor, R.C. Read, A. & Wrangham, R.W. (2000). Male reproductive strategies and social bonds In: Cetacean Societies: Field studies of whales and dolphins. (Eds: J. Mann; R.Connor, P.Tyack, and H. Whitehead) University of Chicago Press, pp 247-269.

Connor, R.C., Heithaus, M.R., Berggren, P. and Miksis, J.L. 'Kerplunking': Surface fluke-splashes during shallow water bottom foraging by bottlenose dolphins. 2000. Marine Mammal. Science. 16:646-653.

Hable, W.E. & Kropf, D.L. (2000) Sperm entry induces polarity in fucoid zygotes. Development. 127:493-501.

2001

Bernal, D., Dickson K.A., Shadwick R.E. & Graham J.B. (2001). Analysis of the evolutionary convergence for high-performance swimming in lamnid sharks and tunas. Comparative Biochemistry and Physiology. 179:695-726.

Bernal, D. Sepulveda, C. & Graham, J.B. (2001). Water tunnel studies of heat balance in swimming mako sharks. Journal of Experimental Bioloy. 204:4043-4054.

Bernal D, Dickson, K.A. & Graham J.B (2001). Convergence for high-performance swimming in lamnid sharks and tunas. Thermoregulation and metabolic biochemistry. American Zoologist. 40:942-943.

*Chute, A.S. & Turner, J.T. (2001). Plankton studies in Buzzards Bay, Massachusetts, USA. V. Ichthyoplankton, 1987-1993. Marine Ecology Progress Series 224: 45-54.

Connor, R.C., Heithaus, M.R. & Barre, L.M. (2001). Complex social structure, alliance stability and mating access in a bottlenose dolphin 'super-alliance'. Proceedings of the Royal Society of London, Biological Sciences. 268:263-267.

Connor, R.C. (2001). Individual foraging specializations in marine mammals: culture and ecology. Behavioral and Brain Sciences, 24:329-330

Ferkin, M. H., Leonard, S. T., Heath, L. A. & Paz-y-Miño C.,G. (2001). Self-grooming as a tactic used by prairie voles, Microtus ochrogaster, to increase scent marking detection by conspecifics. Ethology 107: 939-949.

Hable, W.E., *EerNisse, P., *Hoggan M., & Kropf, D.L. (2001) Effect of calcium ionophores on early development in fucoid algae. Phycological Research 49:145-154.

*Lincoln, J.A., Turner, J.T., Bates, S.S., Léger, C. & Gauthier, D. (2001). Feeding, egg production and egg hatching success of the copepods Acartia tonsa and Temora longicornis on diets of the toxic diatom Pseudo-nitzschia multiseries and the non-toxic diatom Pseudo-nitzschia pungens. Proceedings of the Seventh International Conference on Copepoda, Hydrobiologia, 453/454: 107-120.

*Ledesma, M.E. & O'Connor, N.J.(2001). Habitat and diet of the non-native crab Hemigrapsus sanguineus in southern New England. Northeastern Naturalist. 8:63-78

*Keeney, D.B., & Campbell, R.A. (2001). Grillotia borealis sp. n. (Cestoda: Trypanorhyncha) from five species of Bathyraja (Rajiformes: Arhynchobatidae) in the North Pacific Ocean with comments on parasite enteric distribution. Folia Parasitologica 48: 21-29

*Miksis, J.L., Grund, M.D., Nowacek, D.P., Connor, R.C. & Tyack, P.L. (2001). Cardiac responses to acoustic playback experiments in the captive bottlenose dolphin, Tursiops truncatus. Journal of Comparative Psychology 115:227-332.

*Phillippi, A.L., O'Connor, N.J., Lewis, A.F. & Kim, Y.K. (2001). Surface flocking as a possible antibiofoulant. Aquaculture 195: 225-238

Salkoff, L., Butler, A., Fawcett, G., Kunkel, M., McArdle, C., Paz-y-Miño C.G., Nonet, M., Walton, N., Wang, Z.-w., Yuan, A. & Wei. A. (2001). Evolution tunes the excitability of individual neurons. Neuroscience 103:853-859.

*Stephen, B.J. & R.W. Griffith (2001). Excretion of ammonia and urea during development in the oyster toadfish, Opsanus tau. Marine Freshwater Behavior Physiology 34: 257-264.

2002

Bromage, E. & Owens, L. (2002). Infection of barramundi Lates calcarifer with Streptococcus iniae: effects of different routes of exposure. Diseases of Aquatic Organisms 52:199-205.

Cimino, E.J., Owens, L., Bromage, E. & Anderson, T.A. (2002) A newly developed ELISA showing the effect of environmental stress on levels of hsp86 in Cherax quadricarinatus and Penaeus monodon. Comparative Biochemistry and Physiology. 132A: 591-598.

Ferkin, M. H., Mech, S. G. & Paz-y-Miño C.G. (2002). Scent marking in meadow voles and prairie voles: a test of three hypotheses. Behaviour 138:1319-1336.

Paz-y-Miño C.G., Leonard, S. T. & Trimble, J. F. (2002). Self-grooming and sibling recognition in meadow voles (Microtus pennsylvanicus) and prairie voles (M. ochrogaster). Animal Behaviour 63:331-338.

2003

Bernal, D., *Smith, D., *Lopez, G., *Weitz, D., *Grimminger, T.A., Dickson. K.A. & Graham, J.B. (2003). Comparative studies of high performance swimming in sharks. II. Metabolic biochemistry of locomotor and myocardial muscle in endothermic and ectothermic sharks. Journal of Experimental Biology. 206:2845-2857

Bernal, D., Sepulveda, C., Mathieu-Costello, O. & Graham, J. B. (2003). Comparative studies of high performance swimming in sharks: I. Red muscle morphometrics, vascularization, and ultrastructure. Journal of Experimental Biology. 206:2831-2843.

*Bourdeau, P.E. & O'Connor, N.J. (2003). Predation by the nonindigenous Asian shore crab Hemigrapsus sanguineus on macroalgae and molluscs. Northeastern Naturalist 10: 319-334

*Fedorowicz, S.M., Beard, D. & Connor, R.C. (2003). Food sharing in wild bottlenose dolphins. Aquatic Mammals. 29.3: 355-359.

Hable, W.E., *Miller, N.R. & Kropf D.L. (2003) Polarity establishment requires dynamic actin in fucoid zygotes. Protoplasma 221:193-204.

Kavanagh, K.D. (2003). A molecular switch between proliferation and differentiation, maintained by anti-cancer selection, imposes a developmental constraint on ontogenetic rates and morphological evolution. Evolution 57:939-948.

Kavanagh, K.D. & Alford, R.A. (2003). Sensory and skeletal development and growth in relation to the duration of the embryonic and larval stages in damselfishes (Pomacentridae). Biological Journal of the Linnean Society 80:187-206.

Krützen, M., Sherwin, W.B., Connor, R.C., Barré, L.M., Van de Casteele, T, Mann, J. & Brooks, R. (2003). Contrasting relatedness patterns in bottlenose dolphins (Tursiops sp.) with different alliance strategies. Proceedings of the Royal Society of London, Biological Sciences. 270:497-502.

Liemar, O. & Connor, R. (2003). Byproduct benefits, reciprocity and pseudo-reciprocity in mutualism. In: Genetic & Cultural Evolution of Cooperation (Eds Hammerstein, P.) Dahlem Workshop Report 90, MIT Press; pp. 203-22

Munro, J., Oakey, J., Bromage, E. & Owens, L. (2003). Experimental bacteriophage-mediated virulence in strains of Vibrio harveyi. Diseases of Aquatic Organisms. 54:187-194.

Paz-y-Miño C.G. (2003). Behavioral unknowns: an emerging challenge for conservation. The Conservation Behaviorist 1(2): 2.

Paz-y-Miño C.G. (2003). Contribution of animal behavior research to conservation biology. Animal Behavior Society Newsletter 48(1): 1-2.

2004

*Bisgrove, S.R., Hable, W.E. & Kropf, D.L. (2004) +TIPS and microtubule regulation. The beginning of the plus end in plants. Plant Physiology 136:3855-3863.

Bromage, E., Kaattari, I., Zwollo, P. & Kaattari, S. (2004) Plasmablast and Plasma Cell Production and Distribution in Trout Immune Tissues. Journal of Immunology. 173:7317-7323.

Bromage, E., Ye, J., Owens, L., Kaattari, I. & Kaattari, S. (2004) Use of Staphylococcal Protein A in the Analysis of Teleost Immunoglobulin Structural Diversity. Developmental and Comparative Immunology. 28:803-814.

Krützen, M., Barre, L.M.,Connor, R.C., Mann, J. & Sherwin, W.B. (2004). O father: where art thou? Paternity assessment in an open fission-fusion society of wild bottlenose dolphins (Tursiops sp.) in Shark Bay, Western Australia. Molecular Ecology. 13:1975-1990.

O'Connor, N.J. & Judge, M.L. (2004). Molting of fiddler crab Uca minax megalopae: stimulatory cues are specific to salt marshes. Marine Ecology Progress Series. 282:229-236

Paz-y-Miño C.G., Bond, A.B, Kamil, A.C. & Balda, R.P. (2004). Pinyon jays use transitive inference to predict social dominance. Nature 430: 778-781.

Turner, J.T. & *D.G. Borkman. (2004). Zooplankton grazing during Alexandrium blooms in the Gulf of Maine, p. 95-97. In: Harmful Algae. Proceedings of the Xth International Conference on Harmful Algal Blooms (eds Steidinger, K. A., J. H. Landsberg, C. R. Tomas, and G. A. Vargo), St. Petersburg, Florida, USA,

2005

Albertson, R.C., Payne-Ferreira, T.L., Postlethwait, J. & Yelick, P.C. (2005) Zebrafish acvr2 and acvr2b exhibit dis-tinct roles in craniofacial development. Dev. Dyn. 233:1405-1418.

Bartlett, J.D., *Dwyer, S.E., Beniash, E., Skobe, Z. & Payne-Ferreira, T.L. (2005) Fluorosis: A new model and new in-sights. J. Dent. Res. 84(9):832-836.

Bernal, D. Donley, J.M., Shadwick, R.E. & Syme, D.A. (2005). Mammal-like muscles power swimming in a cold-water shark, Nature 437, 1349-1352.

Bernal, D. & Sepulveda, C. (2005). Evidence for temperature elevation in the aerobic swimming musculature of the Common thresher shark, Alopias vulpinus. Copeia

Connor, R.C. & Whitehead, H. (2005) .Alliances II: Rates of encounter during resource utilization: A general model of intrasexual alliance formation in fission-fusion societies. Animal Behaviour. 69:127-132.

Doucette, G.J., Turner, J.T., Powell, C.L., Keafer, B.A. & Anderson, D.M. (2005). ECOHAB-Gulf of Maine. Trophic accumulation of PSP toxins in zooplankton during Alexandrium fundyense blooms in Casco Bay, Gulf of Maine, April - June, 1998. I. Toxin levels in A. fundyense and zooplankton size fractions. Deep-Sea Research II. 52:2764-2783.

*Gazda, S., Connor, R.C., Edgar, R. & Cox, F. (2005). A Division of Labor with Role Specialization in Group-Hunting Bottlenose Dolphins (Tursiops truncatus) off Cedar Key, Florida. The Proceedings of the Royal Society: Biological Sciences, 272: 135-140.

Hable, W.E., and Kropf D.L. (2005) The Arp2/3 complex nucleates actin arrays during zygote polarity establishment and growth. Cell Motility and the Cytoskeleton 61: 9-20.

*Kassai, Y., Munne, P., Hotta, Y., Penttilä, E., Kavanagh, K., Ohbayashi, N., Takada, S., Thesleff, I., Jernvall, J. & Itoh, N. (2005). Regulation of Mammalian Tooth Cusp Patterning by Ectodin. Science 309:2067-2070.

Kaattari, S., Bromage, E., & Kaattari, I. (2005) Analysis of Long-lived Plasma Cell Production and Regulation: Implications for Vaccine Design for Aquaculture. Aquaculture 246:1-9.

Kavanagh, K.D. (2005). Boom-or-bust growth in the coral reef lagoon. Marine Ecology Progress Series. 286:307-310.

Krützen, M., Mann, J., Heithaus, M.R., Connor, R.C., Bejder, L. & Sherwin, W.B. (2005). Cultural transmission of a foraging strategy involving tool use in bottlenose dolphins. Proceedings of the National Academy of Sciences. 102:8939-8943.

O'Connor, N.J. (2005). Influence of extracts of adult crabs on molting of fiddler crab megalopae (Uca pugnax). Marine Biology 146:753-759.

Paz-y-Miño, C.G. (2005). Animal Cognition and its role in Conservation Behavior. The Conservation Behaviorist 3:4-5.

*Sardi, K., Weinrich, M. & Connor, R.C. (2005). Social interactions of humpback whale (Megaptera novaeangliae): Mother calf pairs on a north Atlantic feeding ground. Behaviour. 142: 731-750.

Sepulveda, C.A., *Wegner, N.C., Bernal, D. & Graham, J.B. (2005). The red muscle morphology of the thresher sharks (family Alopiidae). Journal of Experimental Biology 208:4255-4261.

Sundin, K., Brown, K.H., Drew, R.E., Nichols, K.M., Wheeler, P.A. & Thorgaard, G.H. (2005). Genetic analysis of a development rate QTL in backcrosses of clonal rainbow trout, Oncorhynchus mykiss. Aquaculture 247:75-83

Turner, J.T. & *D.G. Borkman. 2005. Impact of zooplankton grazing on Alexandrium blooms in the offshore Gulf of Maine. Deep-Sea Research II 52: 2801-2816.

Turner J.T., Doucette, G.J., Keafer, B.A. & Anderson, D.M. (2005). ECOHAB-Gulf of Maine. Trophic accumulation of PSP toxins in zooplankton during Alexandrium fundyense blooms in Casco Bay, Gulf of Maine, April - June, 1998. II. Zooplankton abundance and size-fractionated community composition. Deep-Sea Research II 52:2784-2800.

Whitehead, H. & Connor, R.C. (2005). Alliances I: How large should alliances be? Animal Behaviour 69: 117-126.

Zwollo, P., Cole, S., Bromage, E. & Kaattari, S. (2005) Physical and serological analyses of B cell populations in immune tissues of the rainbow trout. Journal of Immunology 174:6608-6616.

2006

Bromage, E., Ye, J. & Kaattari, S. (2006). Antibody structural variation in rainbow trout fluids. Comparative Biochemistry and Physiolology Part B. 143:61-69.

Brown, K.H., Drew, R.E., Weber, L.A. & Thorgaard, G.H. (2006). Intraspecific variation in the rainbow trout mitochondrial DNA genome. Comparative Biochemistry and Physiology Part D Genomics and Proteomics. 1:219-226.

Connor, R.C., Smolker, R.A. & Bejder, L. (2006). Synchrony, social behavior and alliance affiliations in Indian Ocean bottlenose dolphins (Tursiops aduncus). Animal Behavior. 72:1371-1378.

Connor, R.C., Mann, J. & Capps, J. (2006). A sex-specific affiliative contact behavior in Indian Ocean bottlenose dolphins, Tursiops sp. Ethology 112:631-638.

Granéli, E. & Turner, J.T. (2006). Ecology of Harmful Algae. Ecological Studies 189. Springer-Verlag, Berlin and Heidelberg 413 pp.

*Hadley, R., Hable, W.E., & Kropf, D.L. (2006) Polarization of the endomembrane system is an early event in fucoid zygote development. BMC Plant Biology 6:1-10.

Landis, E.D., Palti, Y., Dekoning, J., Drew, R., Phillips, R.B. & Hansen, J.D. (2006). Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes. Immunogenetics 58:56-69.

Kavanagh, K.D. & Olney, J.E. (2006). Ecological Correlates of Population Density and Behavior in the Black Triggerfish Melichthys niger (Balistidae). Environmental Biology of Fishes 76:387-398.

O'Connor, N.J. & *Van, B.T. (2006). Adult fiddler crabs Uca pugnax (Smith) enhance sediment-associated cues for molting of conspecific megalopae. Journal of Experimental Marine Biology and Ecology 335:123-130.

Paz-y-Miño C.G. (2006). Transitive reasoning in animals. Mente y Cerebro/ Investigacion y Cienca of Scientific American 19: 40-45.

Phillips, R.B., Nichols, K.M., DeKoning, J.J., Morasch, M.R., Keatley, K.A., Rexroad III, C., Gahr, S.A., Danzmann, R.G., Drew, R.E. & Thorgaard, G.H. (2006). Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 174:1661-1670.

Rajaniemi, T.K., Goldberg, D.E., Turkington, R. & Dyer, A.R. (2006) Quantitative partitioning of regional and local processes shaping regional diversity patterns. Ecology Letters. 9:121-128.

Turner, J.T., *Borkman, D.G. & Hunt, C.A. (2006). Zooplankton of Massachusetts Bay, USA, 1992-2003: relationships between the copepod Calanus finmarchicus and the North Atlantic Oscillation. Marine Ecology Progress Series. 311:115-124.

2007

Allison, V. J., Rajaniemi, T.K., Goldberg, D.E. & Zak, D.R. (2007). Quantifying direct and indirect effectsof fungicide on an old-field plant community: an experimental null-community approach. Plant Ecology. 190:53-69.

Bromage, E. Vadas, G., Harvey, E., Unger, M., & Kaattari, S. (2007). Validation of an Antibody-Based Biosensor for Rapid Quantification of 2,4,6-Trinitrotoluene (TNT) Contamination in Ground Water and River Water. Environmental Science and Technology. 41:7067-72

Bromage, E., & Kaattari, S. (2007). Simultaneous quantitative analysis of multiple protein species within a single sample using standard scanning densitometry.Journal of Immunological Methods, 323:109-113

Bromage, E., Lackie, T., Unger, M.A., Ye, J. & Kaattari, S.L. (2007) The development of a real-time biosensor for the detection of trace levels of trinitrotoluene (TNT) in aquatic environments. Biosensors and Bioelectronics. 22: 2532-38

Connor, R.C. 2007. Complex alliance relationships in bottlenose dolphins and a consideration of selective environments for extreme brain size evolution in mammals. Philosophical Transactions of the Royal Society: Biological Sciences 362:587-602.

Connor, R.C. 2007. Invested, extracted & byproduct benefits: a modified scheme for the evolution of cooperation. Behav. Proc. 76:109-113.

Drew, R.E., Schwabl, H., Wheeler, P.A. & Thorgaard, G.H. (2007). Detection of QTL influencing cortisol levels in rainbow trout (Oncorhynchus mykiss). Aquaculture 272:S183-S194.

Hight, B.V., Holts, D., Graham, J.B., Kennedy, B.P., Taylor, V., Sepulveda, C.A., Bernal, D., Ramon, D., Rasmussen, R. & Lai, Chin, L. (2007). Plasma catecholamine levels as indicators of the post-release survivorship of juvenile pelagic sharks caught on experimental drift longlines in the Southern California Bight. Marine Freshwater Research. 58:145-151.

*Kaplan, J.D. & Connor, R.C. 2007. A preliminary examination of sex differences in tactile interactions among juvenile Atlantic spotted dolphins (Stenella frontalis). Marine Mammal Science, 23: 943-953.

Kavanagh, K.D., Evans, A.R. & Jernvall, J. (2007). Predicting evolutionary patterns of mammalian teeth from development. Nature 449:427-432.

Jiang, M., Brown, M.W., Turner, J.T., Kenney, R.D., Mayo, C.A., Zhang, Z. & Zhou, M. (2007). Springtime transport and retention of Calanus finmarchicus in Massachusetts and Cape Cod Bays, USA, and implications for right whale foraging. Marine Ecology Progress Series. 349:183-197.

*Kim, A.K.A. & O'Connor, N.J. (2007). Early stages of the Asian shore crab Hemigrapsus sanguineus as potential prey for the striped killifish Fundulus majalis. Journal of Experimental Marine Biology and Ecology 346: 28-35.

Morisaka, T. & Connor, R.C. 2007. Predation by killer whales (Orcinus orca) and the evolution of whistle loss and narrow-band high frequency clicks in odontocetes. J. Evol. Biol. 20: 1439-1458

Murphy, B.F., Leis, J.M. & Kavanagh, J.D. (2007). Larval development of Pomacentrus amboinensis (Perciformes: Pomacentridae), the Ambon damselfish. Journal of Fish Biology. 71:569-584.

O'Connor, N.J. (2007). Stimulation of molting in megalopae of the Asian shore crab Hemigrapsus sanguineus: physical and chemical cues. Marine Ecology Progress Series. 352:1-8.

Oviatt, C.A., Hyde, K.J.W., Keller, A.A. & Turner, J.T. (2007). Production patterns in Massachusetts Bay with outfall relocation. Estuaries and Coasts. 30:35-46.

Paz-y-Miño C.G. (2007). Conservation behavior in the Galapagos. The Conservation Behaviorist 5:4-5.

Perry, C.N., Cartamil, D.P., Bernal, D., Sepulveda, C.A., Theilmann, R.J., Graham, J.B. & Frank, L.R. (2007) Quantification of red myotomal muscle volume and geometry in the shortfin mako shark (Isurus oxyrinchus) and the salmon shark (Lamna ditropis) using T1-weighted magnetic resonance imaging. Journal of Morphology. 266:284-292.

Rajaniemi, T.K. (2007). Root foraging traits and competitive ability in heterogeneous soils. Oecologia. 153:142-152

Reynolds, H.L. & Rajaniemi, T.K. (2007). Plant interactions: competition. Chapter 15. In Functional plant ecology (Eds. Pugnaire, F. Valladares, F.), CRC Press LLC. pp 457-480.

*Roemer, M.E. & K. Oliveira. 2007. Validation of back-calculation growth equations of juvenile bluefish (Pomatomus saltatrix) using tetracycline marked otoliths. Fisheries Bulletin 105: 305-309.

Sepulveda, C.A., Graham, J.B. & Bernal, D. (2007). Aerobic metabolic rates of swimming mako sharks, Isurus oxyrinchus. Marine Biology. 152:1087-1094.

2008

Barroso, R.M., Wheeler, P.A., LaPatra, S.E.,Drew, R.E. & Thorgaard, G.H. (2008). QTL for IHNV resistance and growth identified in a rainbow (Oncorhynchus mykiss) X Yellowstone cutthroat (Oncorhynchus clarki bouvieri) trout cross. Aquaculture. 277:156-163.

Bromage, E., *Long, C. & Kaattari, S. (2008). Biomarkers of oogenesis in Macoma balthica determined by subtractive immunization. Aquatic Biology 3:139-145

Drew, R.E., Rodnick, K.J., Settles, M., Wacyk, J., Churchill, E., Powell, M.S., Hardy, R.W., Murdoch, G.K., Hill, R.A. & Robison, B.D. (2008). Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio). Physiological Genomics. 35:283-295.

*Duffy-Echevarria, E., Connor, R.C. & St. Aubin, D. (2008). Observations of strand feeding by bottlenose dolphins (Tursiops truncatus) in Bull Creek, South Carolina. Marine Mammal Science. 24:202-206.

*Gauthier, D.A., *Lincoln, J.A. & Turner, J.T. (2008). Distribution, abundance, and growth of larval tautog, Tautoga onitis, in Buzzards Bay, Massachusetts, USA. Marine Ecology 29: 76-88.

Hable, W.E., *Reddy, S. & *Julien, L. (2008) The Rac1 inhibitor, NSC23766, depolarizes adhesive secretion, endomembrane cycling, and tip growth in the fucoid alga, Silvetia compressa. Planta 227:991-1000.

*Hassoun, L.,Hable, W., & Payne-Ferreira, T.L. (2008). Tissue Regeneration in the classroom. American Biology Teacher 70: 530-532.

*Heredia-Middleton, P., Brunelli, J., Drew, R.E. & Thorgaard, G.H. (2008). Heat shock protein (HSP70) RNA expression differs among rainbow trout (Oncorhynchus mykiss) clonal lines. Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology. 149:552-556.

*Iafrate, J.D. & Oliveira, K. (2008). Factors affecting migration patterns of juvenile river herring in a coastal Massachusetts stream. Environmental Biology of Fishes 81: 101-110.

Ianora, A., Casotti, R., Bastianini, M., Brunet, C., d'Ippolito, G., Acri, F., Fontana, A., Cutignano, A., Turner, J.T. & Miralto, A. (2008). Low reproductive success for copepods during a bloom of the non-aldehyde-producing diatom Ceratulina pelagica in the North Adriatic Sea. Marine Ecology. 29:399-410.

Jezewski, P., Fang, P.K., Payne-Ferreira. T,L, & Yelick, P.C. (2008). Zebrafish wnt9b Synteny and expression during first and second arch, heart and pectoral fin bud morphogenesis. Zebrafish. 5:169-77.

Kaattari, S., *Brown, G., Kaattari, I., Ye, J., Haines, A. & Bromage, E. (2008). The Cellular and Developmental Biology of the Teleost Antibody Response. In: Fish Defenses Vol I Immunology (Eds. Zaccone, Secombes, Manning, Kapoor). Science Publishers, New Hampshire.

*Long, C., Bromage, E., Seitz, R. & Kaattari, S. (2008). Quantifying fecundity in Macoma balthica using an enzyme-linked immunosorbent assay (ELISA). Aquatic Biology 3: 187-193.

*Muzzy, R.A. & Hable, W.E. (2008). Rac1 function during fucoid development. Plant Signaling and Behavior 3:717-719.

Robison, B.D., Drew, R.E., Murdoch, G.K., Powell, M., Rodnick, K.J., Settles, M., Stone, D., Churchill, E., Hill, R.A., Papasani, M.R., Lewis, S.S. & Hardy, R.W.. (2008). Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio). Comparative Biochemistry and Physiology Part D Genomics and Proteomics. 3:141-154.

Sepulveda, C.A., Dickson, K.A., Bernal, D. & Graham, J. B. (2008). Elevated red myotomal muscle temperatures in the most basal tuna species, Allothunnus fallai. Journal of Fish Biology. 73: 241-249.

2009

*Alfaqih, M.A., Brunelli, J.P., Drew, R.E. & Thorgaard, G.H. (2009). Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss). BMC Genetics 10:2.

*Aieta A.E. & Oliveira, K. (2009). Distribution of the swimbladder parasite Anguillicola crassus in American eels in eastern North America. Diseases of Aquatic Organisms. 84:229-235

Bernal, D., Sepulveda, C., Musyl, M. & Brill, R. (2009). The eco-physiology of swimming and movement patterns of tunas, billfishes, and large pelagic sharks. Chapter 14. In Fish Locomotion - an etho-ecological perspective. (Eds. P. Domenici & D. Kapurr) Science Publishers.

Bromage, E., *Stephens, R. & *Hassoun, L. (2009). The Third Dimension of ELISPOTs: Quantifying Antibody Secretion from individual Plasma Cell. Journal of Immunological Methods. 356:75-79.

Bromage, E. & Owens, L. (2009) Environmental factors affecting the susceptibility of barramundi to Streptococcus iniae. Aquaculture. 290:224-228.

Bromage, E., Carpenter, L., Kaattari, S. & *Patterson, M. (2009). Quantification of coral heat shock proteins from individual coral polyps. Marine Ecology Progress Series 376:123-132

*Chapalamadugu, K.C., Robison, B.D., Drew, R.E., Powell, M.S., Hill, R.A., Amberg, J.J., Rodnick, K.J., Hardy, R.W., Hill, M.L., & Murdoch, G.K. (2009). Dietary carbohydrate level affects transcription factor expression that regulates skeletal muscle myogenesis in rainbow trout. Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology 153:66-72.

Espinosa, A., Pedrizet, G., Paz-y-Miño C.G., Lanfranchi, R. & Phay, M. (2009). Effects of iron depletion on Entoamoeba histolytica alcohol dehydrogenase 2 (EhADH2) and trophozoite growth: implications for antiamoebic therapy. Journal of Antimicrobial Chemotherapy 63:675-678.

Hart, P.E. & Hable, W.E. Biology of Cells Laboratory Manual. Kendall Hunt Publishing, Dubuque, Iowa, U.S.A. Copyright 2009.

Hunt, C., *Borkman, D.G., Lacoture, R., Turner, J.T. & Libby, S. (2009), Phytoplankton in Massachusetts Bay USA 1992-2007 Estuaries and Coasts.

Jezewski, P., Fang, P.K., Payne-Ferreira, T.L. & Yelick, P.C. (2009) Alternative splicing, phylogenetic analysis, and craniofacial expression of zebrafish tbx22. Dev. Dyn 238:1605-1612.

Paz-y-Miño C.G. & Espinosa, A. (2009). Acceptance of evolution increases with student academic level: a comparison between a secular and a religious college. Evolution: Education & Outreach 2:655-675.

Paz-y-Miño C.G. & Espinosa, A. (2009). Assessment of biology majors versus non-majors views on evolution, creationism and intelligent design. Evolution: Education & Outreach 2: 75-83.

Rajaniemi, T.K., Turkington, R. & Goldberg, D.E. (2009). Community level consequences of species interactions in an annual plant community. Journal of Vegetation Science. 20:836-846.

Rajaniemi, T.K. & Allison, V.J. (2009). Abiotic conditions and plant cover differentially affect microbial biomass and community composition on dune gradients. Soil Biology and Biochemistry. 41:102-109

*Spier, C., Bromage, E., Harris, T., Unger, M. & Kaattari, S. (2009). The development and evaluation of monoclonal antibodies for the detection of polycyclic aromatic hydrocarbons. Analytical Biochemistry. 387:287-293.

Turner, J.T., *Borkman, D.G., *Lincoln, J.A., *Gauthier, D.A. & *Petitpas, C.M. (2009). Plankton studies in Buzzards Bay, Massachusetts, USA. VI. Phytoplankton and water quality, 1987-1998. Marine Ecology Progress Series. 376:103-122.

2010

Aalbers. S,, Bernal, D., & Sepulveda, C. (2010). The functional role of the caudal fin in the feeding ecology of the common thresher shark (Alopias vulpinus). Journal of Fish Biology. 76: 1863-1868

Bernal, D., Donley, J., McGillivray, D.G., Aalbers, S.A., Syme, D.A., & Sepulveda, C. (2010). Function of the medial red muscle during sustained swimming in common thresher sharks: Contrast and convergence with thunniform swimmers. Comparative Biochemistry and Physiology 155A: 454-463 doi:10.1016/j.cbpa.2010.01.005

Carpenter, L., Patterson, M., & Bromage, E. (2010). Water flow influences the spatiotemporal distribution of heat shock protein 70 within colonies of the coral Montastrea annularis. Journal of Experimental Marine Biology and Ecology. In press

Hable, W.E. & Hart, P.E. (2010). Signaling mechanisms in the establishment of plant and fucoid algal polarity. Molecular Reproduction and Development. in press

Moisander, P.H. Beinart, R.A., Hewson, I., White, A., Johnson, K., Carlson, C., Montoya, J.M. & Zehr, J.P. 2010. Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain. Science 327:1512-1514.

Paz-y-Miño C.G. & Espinosa, A. (2010). Integrating horizontal gene transfer and common descent to depict evolution and contrast it with "common design."Journal of Eukaryotic Microbiology 57:11-18.

Skomal, G. & Bernal, D. (2010). Mechanisms and Adaptations Associated with Physiological Stress. Chapter 11. In Volume 2. The Biology of sharks an their relatives. Physiological Adaptations, Behavior, Ecology, Conservation and Management of Sharks and Their Relatives. (Eds. J.C. Carrier, J.A. Musick and M.R. Heithaus). CRC Press. pp 459-490.

Ye, J., Bromage, E. & Kaattari, S. (2010). The strength of B cell interaction with antigen determines the degree of IgM polymerization. Journal of Immunology. 184: 844-850

2011

Bernal, D. (2011). Pelagic Fishes. Chapter 112 In Encyclopedia of Fish Physiology. (Eds. Cech, J., Farrell, A.). Elsevier Publishers.

Bernal D., Carlson, J., Goldman K., and Lowe, C. (2011). Energetics, Metabolism, and Endothermy in Sharks and Rays, Chapter 7: In Volume 1. The Biology of sharks an their relatives. Physiological Adaptations, Behavior, Ecology, Conservation and Management of Sharks and Their Relatives. 2nd edition (Eds. J. C. Carrier J. A. Musick and M. R. Heithaus). CRC Press. In press.

Bombar, D., Moisander, P.H., Dippner, J.W., Foster, R.A., Voss, M., Karfield, B., Zehr, J.P. (2011) Distribution of diazotrophic micro-organisms and nifH gene expression in the Mekong River plume during intermonsoon. Marine Ecology Progress Series 424: 39-U55

*Breton, J.S. K. Oliveira, R. Drew, K.L. Jones, C. Hagen, and S. Lance (2011) Development and characterization of ten polymorphic microsatellite loci in the yellowtail flounder (Limanda ferruginea). Conservation Genetics Resource 3:369-371

*Duffy, W.J., McBride, R.S., Cadrin, S.X. and K. Oliveira (2011) Is Cating's method of transverse groove counts to annuli applicable for all stocks of American shad? Transactions of the American Fisheries Society. (140, 4: 1023-1034)

Garbeva P., Tyc O., Remus-Emsermann M.N, van der Wal A., Vos M., Silby M., de Boer W. (2011). No apparent costs for facultative antibiotic production by the soil bacterium Pseudomonas fluorescens Pf0-1. PLoS One 6:e27266

Garbeva P., Silby M.W., Raaijmakers J.M., Levy S.B., Boer W. (2011). Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors. ISME Journal. 5:973-85.

Frere, C. H., Mann, J., Krutzen, M. Connor, R.C., Bejder, L., Sherwin, W. B. (2011) Nature and nurture: a step towards investigating their interactions in the wild. Communicative & Integrative Biology 4: 192-193.

*Messina, D.S., and Rajaniemi, T.K. (2011) Does the seed bank reflect plant distributions in a coastal dune? Northeastern Naturalist 18:107-114.

*Milligan, P.J., Stahl, E.A., Schizas, N.V. and Turner, J. TY. 2011. Phylogeography of the copepod Acartia hudsonica in estuaries of the northeastern United States. Hydrobiolgia. 666:155-165.

Nagler, J., Cavileer, T., Hunter, S., Drew, R., Okutsu, T., Sakamoto, T., & Yoshizaki, G. (2011). Non-sex specific genes associated with the secondary mitotic period of primordial germ cell proliferation in the gonads of embryonic rainbow trout (Oncorhynchus mykiss). Molecular Reproduction and Development. 78:181-187.

Moisander, P.H., Zhang, R.F., Boyle, E.A., Hewson, I., Montoya, J.P., Zehr, J.P. (2011)Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean. The ISME Journal doi:10.1038/ismej.2011.152

*Patterson, J., Sepulveda, C. and Bernal, D. (2011). The vascular morphology and in vivo muscle temperatures of thresher sharks (Alopiidae). Journal of Morphology. 272:1353-1364.DOI: 10.1002/jmor.10989.

Paz-y-Miño-C, G., Espinosa A. & Bai, C. 2011. The Jackprot Simulation couples mutation rate with natural selection to illustrate how protein evolution is not random. Evolution: Education and Outreach 4:502-514.

Paz-y-Miño-C, G. & Espinosa A. 2011. On the theory of evolution versus the concept of evolution: three observations. Evolution: Education and Outreach 4:308�312.

Paz-y-Miño-C, G. 2011. (editor) The Conservation Behaviorist 9(1): 1-8.

Paz-y-Miño-C, G. & Espinosa A. 2011. New England faculty and college students differ in their views about evolution, creationism, intelligent design, and religiosity. Evolution: Education and Outreach 4:323�342.

Rajaniemi, T.K. (2011) Competition for patchy soil resources reduces community evenness. Oecologia 165:169-174.

Silby M.W, Winstanley C., Godfrey S.A., Levy S.B., Jackson R.W. (2011). Pseudomonas genomes: diverse and adaptable. FEMS Microbiol Rev. 35:652-80.

Turner, J. T., D. G. Borkman, & P. S. Libby. 2011. Zooplankton trends in Massachusetts Bay, USA: 1998-2008. Journal of Plankton Research 33: 1066-1080.

Ye J, Bromage E, Kaattari I, Kaattari S (2011) Transduction of binding affinity by B lymphocytes: A new dimension in immunological regulation. Developmental and Comparative Immunology 35(9):982-90

2012

*Boardman T, Warner C, Gomez-Ramirez F, Matriciano J, Bromage E (2012). Characterization of anti-trout CD3e monoclonal antibodies. Veterinary Immunology and Immunopathology. 145: 511-515.

*Costa G, Danz H, Kataria P, Bromage E. (2012) A holistic view of the dynamisms of teleost IgM: A case study of Streptococcus iniae vaccinated rainbow trout (Onchorhynchus mykiss). Developmental and Comparative Immunology.36: 298-305.

Donley, J.M, Sepulveda, C.A., Aalbers, S.A., McGillivray, D.G., Syme, D.A. and Bernal, D. (in press) Temperature effects on the contractile properties of locomotor muscle in the common thresher shark (Alopias vulpinus). Fish Biochemistry and Physiology.

Espinosa, A.& Paz-y-Miño-C, G. 2012. Discrimination, Crypticity and Incipient Taxa in Entamoeba. Journal of Eukaryotic Microbiology, DOI: 10.1111/j.1550-7408.2011.00606.x.

Kanuga, M.K., Drew, R.E., Wilson-Leedy, J.G., & Ingermann, R.L. (in press). Subpopulation distribution of motile sperm relative to activation medium in steelhead (Oncorhynchus mykiss). Theriogenology.

*Marshall, H., *Field, L. *Afiadata, A., Sepulveda, C., Skomal, G. and Bernal, D. (in press). Haematological indicators of stress in longline-captured sharks Comparative Biochemistry and Physiology

Moisander, P.H., Cheshire, L.A., Braddy, J., Calandrino, E., Hoffman, M., Piehler, M.F., & Paerl, H.W. (2012) Facultative diazotrophy increases competitive strength of Cylindrospermopsis raciborskii under fluctuating nitrogen availability. FEMS Microbiology Ecology

Mulholland, M.R., Filippino, K.C., Bernhardt, P.W., Blanco, J., Mondragon, E., Turk, K., Moisander, P.H., & Zehr, J.P. (In press) N2 fixation and nifH gene diversity in mid -Atlantic coastal waters. Limnology and Oceanography.

Paz-y-Miño-C, G. (submitted). Cognitive Repertoire, Cognitive Legacies and Collective Reasoning: The Next Frontiers in Conservation Behavior. Animal Behavior, 3 volumes. ABC-CLEO, 2012.

Paz-y-Miño-C, G. & Espinosa A. (in press) Educators of prospective teachers hesitate to embrace evolution due to deficient understanding of science/evolution and high religiosity. Evolution: Education and Outreach.

Paz-y-Miño-C, G. & Espinosa, A. 2012. Introduction: Why People Do Not Accept Evolution: Using Protistan Diversity to Promote Evolution Literacy. Journal of Eukaryotic Microbiology, DOI: 10.1111/j.1550-7408.2011.00604.x .

*Ramirez-Gomez F, *Greene W, *Rego K, Hansen JD, *Costa G, Kataria P, Bromage E. (2012) Rainbow trout utilize a novel splicing mechanism for the generation of secreted IgD. Journal of Immunology. 183. 1341-1349.

*Rasch, J.A. and N.J. O�Connor. (in press) Development and behavior of megalopae of the non-native crab Hemigrapsus sanguineus in response to chemical cues from coastal fishes. Journal of Experimental Marine Biology and Ecology

Turner, J. T., V. Roncalli, P. Ciminiello, C. Dell'Aversano, E. Fattorusso, L. Tartaglione, Y. Carotenuto, G. Romano, F. Esposito, A. Miralto, & A. Ianora. 2012. Biogeographic effects of the Gulf of Mexico red tide dinoflagellate Karenia brevis on Mediterranean copepods. Harmful Algae 14: (in press)

Contact Info:

Send email to Whitney Hable, Graduate Program Director